PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00909g16001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 199aa    MW: 23025.5 Da    PI: 9.6183
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00909g16001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.38.1e-181664250
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               i++k  r+v+fskR++ ++KK +ELS+L  a++ v++fs++gk y+y 
  Peinf101Scf00909g16001.1 16 LIKSKEARYVSFSKRKASLFKKVNELSTLMRADIGVVLFSPSGKSYTYG 64
                              69*********************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-22766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.829767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-23884IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-14929IPR002100Transcription factor, MADS-box
PfamPF003193.1E-191763IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MERKRSKGRQ KIEMKLIKSK EARYVSFSKR KASLFKKVNE LSTLMRADIG VVLFSPSGKS  60
YTYGSTNIEE IIDKFLQWKQ DESVDDESDS NNADNLIDVF KAFDDFRDEI VTLNELEKNR  120
RRRYRIIHPG SEIPPDKNRL VRLVECKLQL DKLKKMAIRI QELMLSTSRS VLSTSAKCHC  180
NFDLNVLPVL DEGECSGTK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159413.14e-59PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1AZT99e-63M1AZT9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000338612e-62(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-20AGAMOUS-like 61